Read Set 0001

Microbe - approx. size: 3MBp, approx. GC: 50%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 395000 3 30 0.39 3.79 11 0 1.55 5.29 1.33
nucleotides spades single-cell 295000 4 36 0.47 3.79 9 0 1.43 5.50 1.18
nucleotides spades careful 395000 3 30 0.39 3.08 11 0 2.75 14.41 2.36
nucleotides spades single-cell-careful 295000 4 37 0.49 2.02 7 0 2.66 14.27 2.19
nucleotides idba default 155000 8 66 0.50 0.38 1 0 0.98 3.16 0.94
nucleotides idba single-cell 192000 7 59 0.50 0.38 1 0 0.63 2.91 0.61
nucleotides velvet-optimiser default 517000 3 30 0.80 16.16 35 2 2.30 15.39 2.21
nucleotides velvet default 29000 30 237 1.81 7.37 0 0 0.13 3.40 0.13
nucleotides velvet careful 253000 6 50 0.56 0.46 1 0 0.07 2.19 0.06
nucleotides abyss default 295000 4 45 0.19 0.80 6 0 0.24 1.51 0.23
nucleotides abyss adaptive 368000 8 65 0.39 1.47 11 1 0.72 1.21 0.64
nucleotides abyss k-32 78000 13 116 1.00 1.74 9 0 0.26 1.33 0.25
nucleotides abyss k-96 460000 3 31 0.06 0.90 10 0 0.20 1.20 0.19
nucleotides soap-denovo default 19000 55 346 2.79 0.17 0 0 0.12 7.12 0.11
nucleotides soap-denovo kmer-10-cutoff 20000 52 337 2.76 0.18 0 0 0.10 7.12 0.10
koadman docker-a5-miseq default 564000 3 18 0.30 0.40 13 3 2.61 13.56 2.51
egoltsman meraculous2-docker k41 316000 4 38 0.68 0.49 4 0 0.78 3.95 0.76
nucleotides minia default 39000 29 182 0.98 10.63 1 0 0.42 1.64 0.40
nucleotides minia careful 150000 9 69 0.72 0.55 1 0 0.19 1.60 0.18
nucleotides sga default 250000 5 44 0.45 0.45 2 0 1.51 5.17 1.44
nucleotides sga careful 260000 5 47 0.42 0.46 2 0 1.98 5.15 1.89
nucleotides megahit default 99000 12 83 0.55 0.41 1 0 0.32 8.66 0.31
nucleotides megahit no-mercy 118000 11 76 0.55 0.42 1 0 0.30 8.54 0.29
nucleotides sparse-assembler default 109000 9 85 0.84 0.93 4 0 0.09 1.03 0.09
nucleotides sparse-assembler careful 152000 8 65 0.54 0.44 1 0 0.07 1.01 0.07
Read Set 0002

Microbe - approx. size: 4MBp, approx. GC: 40%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 108000 15 99 2.61 4.80 7 1 1.65 5.54 1.12
nucleotides spades single-cell 108000 15 107 2.70 10.57 15 3 1.49 5.19 0.98
nucleotides spades careful 107000 15 98 2.61 5.17 8 2 3.03 12.58 2.05
nucleotides spades single-cell-careful 107000 15 103 2.75 3.49 13 2 2.91 12.56 1.90
nucleotides idba default 75000 22 130 2.94 0.85 2 0 1.02 3.24 0.75
nucleotides idba single-cell 76000 22 126 2.90 0.90 2 0 0.70 3.02 0.51
nucleotides idba idba 3000 481 1424 14.76 0.08 0 0 0.31 2.64 0.24
nucleotides velvet-optimiser default 97000 16 109 3.22 13.38 45 9 2.22 15.47 1.64
nucleotides velvet default 19000 85 413 4.81 3.45 0 0 0.12 2.98 0.09
nucleotides velvet careful 81000 21 125 2.99 0.71 2 0 0.07 2.16 0.05
nucleotides abyss default 87000 19 116 1.25 11.73 7 0 0.23 1.37 0.17
nucleotides abyss adaptive 86000 20 116 1.07 4.89 8 0 0.56 1.20 0.40
nucleotides abyss k-32 51000 33 181 1.79 14.00 12 0 0.27 1.28 0.19
nucleotides abyss k-96 97000 17 106 1.08 5.04 8 0 0.19 1.18 0.14
nucleotides soap-denovo default 12000 119 569 6.00 0.20 0 0 0.11 7.12 0.08
nucleotides soap-denovo kmer-10-cutoff 12000 118 568 5.95 0.20 0 0 0.11 7.12 0.08
koadman docker-a5-miseq default 109000 15 79 2.42 2.26 36 5 2.79 13.67 2.06
egoltsman meraculous2-docker k41 89000 19 122 3.31 0.77 5 0 0.79 4.19 0.59
nucleotides minia default 38000 41 226 3.66 3.74 0 0 0.43 1.66 0.32
nucleotides minia careful 41000 41 210 3.11 0.59 1 0 0.20 1.62 0.15
nucleotides sga default 86000 20 121 2.69 0.64 2 0 1.47 5.58 1.07
nucleotides sga careful 85000 20 121 2.67 0.54 2 0 1.91 5.14 1.39
nucleotides megahit default 61000 25 153 3.10 2.12 3 1 0.33 8.73 0.24
nucleotides megahit no-mercy 65000 24 148 3.10 2.21 3 1 0.33 8.81 0.24
nucleotides sparse-assembler default 45000 34 196 3.46 1.28 2 0 0.09 1.00 0.07
nucleotides sparse-assembler careful 51000 32 173 2.90 0.91 3 0 0.08 0.99 0.06
Read Set 0003

Microbe - approx. size: 4MBp, approx. GC: 40%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 174000 10 65 1.82 8.54 4 0 1.67 5.68 1.12
nucleotides spades single-cell 156000 10 76 1.99 9.20 4 1 1.53 5.53 0.99
nucleotides spades careful 179000 10 65 1.83 6.61 5 0 3.13 14.35 2.10
nucleotides spades single-cell-careful 159000 10 72 1.96 4.66 5 1 3.01 14.09 1.93
nucleotides idba default 132000 13 79 2.12 1.32 3 0 0.95 3.23 0.71
nucleotides idba single-cell 138000 13 74 2.11 1.68 3 0 0.63 3.01 0.47
nucleotides idba idba 3000 434 1388 11.38 0.01 0 0 0.32 2.63 0.24
nucleotides velvet-optimiser default 153000 11 60 2.19 12.32 40 9 2.42 15.45 1.82
nucleotides velvet default 27000 50 309 3.67 3.43 0 0 0.12 2.98 0.09
nucleotides velvet adaptive 37000 43 264 3.39 2.90 0 0 0.66 2.68 0.49
nucleotides velvet careful 152000 12 73 2.18 0.29 2 0 0.07 2.17 0.05
nucleotides abyss default 154000 11 68 1.46 5.37 2 1 0.23 1.38 0.17
nucleotides abyss adaptive 80000 23 140 2.19 7.93 2 0 0.78 1.45 0.58
nucleotides abyss k-32 70000 22 138 2.22 8.66 2 0 0.27 1.30 0.20
nucleotides abyss k-96 171000 10 66 0.82 5.68 5 0 0.20 1.18 0.15
nucleotides soap-denovo default 18000 81 438 4.34 0.07 0 0 0.11 7.08 0.08
nucleotides soap-denovo kmer-10-cutoff 18000 78 433 4.30 0.07 0 0 0.11 7.12 0.08
koadman docker-a5-miseq default 191000 9 40 1.62 5.95 30 1 2.78 13.91 2.07
egoltsman meraculous2-docker k41 142000 12 72 2.21 0.52 4 0 0.81 4.25 0.61
nucleotides minia default 52000 31 181 2.59 2.93 0 0 0.42 1.66 0.31
nucleotides minia careful 82000 18 114 2.36 0.43 1 0 0.20 1.56 0.15
nucleotides sga default 133000 13 76 1.96 1.50 3 0 1.49 5.51 1.10
nucleotides sga careful 134000 13 78 1.92 0.93 3 0 1.90 5.16 1.39
nucleotides megahit default 90000 18 106 2.17 1.65 3 0 0.33 8.57 0.24
nucleotides megahit no-mercy 95000 17 103 2.16 1.66 3 0 0.33 8.82 0.24
nucleotides sparse-assembler default 68000 25 145 2.45 1.29 1 0 0.09 1.00 0.07
nucleotides sparse-assembler careful 107000 16 94 2.06 0.62 1 0 0.07 0.99 0.06
Read Set 0004

Microbe - approx. size: 4MBp, approx. GC: 50%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 90000 15 142 3.21 6.55 4 0 1.67 5.76 1.14
nucleotides spades single-cell 81000 17 158 3.86 15.62 5 4 1.53 5.62 1.01
nucleotides spades careful 92000 15 144 3.27 3.65 4 0 3.05 12.56 2.08
nucleotides spades single-cell-careful 82000 17 150 3.69 3.29 5 4 2.99 12.14 1.96
nucleotides idba default 45000 30 216 4.14 0.38 0 0 1.15 3.23 0.86
nucleotides idba single-cell 50000 29 209 4.09 0.31 0 0 0.83 3.00 0.62
nucleotides idba idba 2000 802 1602 27.95 0.35 0 0 0.31 2.68 0.26
nucleotides velvet-optimiser default 85000 16 143 4.39 23.38 119 17 2.17 15.43 1.65
nucleotides velvet default 14000 97 510 8.69 6.15 0 0 0.13 3.16 0.10
nucleotides velvet careful 54000 25 202 4.27 0.46 0 0 0.07 2.16 0.05
nucleotides abyss default 57000 23 203 1.95 29.07 0 0 0.23 1.48 0.17
nucleotides abyss adaptive 92000 16 158 1.07 14.06 4 0 0.57 1.18 0.42
nucleotides abyss k-32 42000 32 289 4.46 27.49 3 0 0.27 1.37 0.20
nucleotides abyss k-96 89000 16 146 1.40 17.70 2 0 0.21 1.26 0.16
nucleotides soap-denovo default 10000 130 632 10.53 0.63 0 0 0.11 7.12 0.08
nucleotides soap-denovo kmer-10-cutoff 10000 127 624 10.51 0.60 0 0 0.11 7.12 0.08
koadman docker-a5-miseq default 125000 12 94 2.35 2.38 85 17 2.86 13.70 2.15
egoltsman meraculous2-docker k41 69000 20 177 4.22 0.25 3 0 0.91 4.26 0.71
nucleotides minia default 25000 56 353 5.84 8.45 0 0 0.43 1.68 0.33
nucleotides minia careful 24000 63 356 4.50 0.58 0 0 0.20 1.56 0.15
nucleotides sga default 66000 20 185 3.35 1.12 0 0 1.51 5.36 1.11
nucleotides sga careful 65000 20 188 3.36 1.12 0 0 1.95 5.54 1.42
nucleotides megahit default 40000 35 259 4.48 8.89 1 5 0.33 8.78 0.24
nucleotides megahit no-mercy 41000 34 253 4.52 7.39 1 4 0.33 8.67 0.25
nucleotides sparse-assembler default 34000 38 294 5.54 2.51 1 0 0.09 1.02 0.07
nucleotides sparse-assembler careful 29000 48 303 4.00 0.73 0 0 0.08 1.00 0.06
Read Set 0005

Microbe - approx. size: 2MBp, approx. GC: 40%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 90000 9 54 2.00 1.89 0 0 1.56 5.08 2.14
nucleotides spades single-cell 89000 9 53 2.03 6.98 0 2 1.45 4.97 1.85
nucleotides spades careful 90000 9 54 2.02 1.31 0 0 2.84 10.24 3.89
nucleotides spades single-cell-careful 88000 9 52 1.89 2.62 0 2 2.77 10.26 3.52
nucleotides idba default 69000 12 66 2.56 0.43 0 0 0.90 2.95 1.50
nucleotides idba single-cell 78000 11 62 2.50 0.42 0 0 0.58 2.72 0.98
nucleotides idba idba 1000 632 675 48.24 0.00 0 0 0.30 2.31 0.57
nucleotides velvet careful 80000 11 58 2.77 0.40 0 0 0.07 2.16 0.11
nucleotides abyss default 85000 10 55 1.28 5.14 0 0 0.23 1.19 0.39
nucleotides abyss adaptive 83000 10 58 1.23 3.60 0 0 0.71 1.24 1.17
nucleotides abyss k-32 68000 12 64 2.06 5.89 1 0 0.24 1.13 0.40
nucleotides abyss k-96 87000 10 55 1.24 2.79 1 0 0.19 1.01 0.31
nucleotides soap-denovo default 24000 25 148 4.28 0.25 0 0 0.11 5.76 0.18
nucleotides soap-denovo kmer-10-cutoff 30000 21 131 4.17 0.21 0 0 0.11 5.76 0.18
koadman docker-a5-miseq default 95000 8 43 1.89 1.10 12 4 2.64 13.82 4.43
egoltsman meraculous2-docker k41 78000 10 62 2.93 0.36 1 0 0.74 3.60 1.27
nucleotides minia default 38000 19 105 3.10 7.39 0 0 0.38 1.59 0.65
nucleotides minia careful 80000 11 57 2.64 0.47 0 0 0.16 1.55 0.28
nucleotides sga default 58000 13 76 2.31 0.54 0 0 1.40 5.03 2.30
nucleotides sga careful 57000 13 76 2.31 0.58 0 0 1.85 4.93 3.03
nucleotides megahit default 57000 13 75 2.71 1.26 0 1 0.23 9.04 0.37
nucleotides megahit no-mercy 63000 12 71 2.72 1.03 0 1 0.23 8.96 0.38
nucleotides sparse-assembler default 50000 15 88 2.88 1.33 0 0 0.09 0.97 0.15
nucleotides sparse-assembler careful 82000 11 59 2.39 0.72 0 0 0.08 0.96 0.13
Read Set 0006

Microbe - approx. size: 3MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 418000 4 19 0.64 2.45 4 0 1.48 5.35 1.36
nucleotides spades single-cell 427000 4 23 0.65 6.31 2 0 1.39 5.53 1.24
nucleotides spades careful 407000 4 19 0.63 1.31 3 0 2.70 14.07 2.48
nucleotides spades single-cell-careful 405000 4 22 0.66 2.29 2 0 2.56 14.07 2.26
nucleotides idba default 133000 10 56 0.88 0.21 0 0 1.40 3.25 1.39
nucleotides idba single-cell 215000 7 38 0.88 0.23 0 0 0.63 2.90 0.63
nucleotides velvet-optimiser default 239000 6 34 0.92 28.31 9 2 2.48 15.44 2.49
nucleotides velvet default 46000 22 147 1.94 21.92 0 0 0.15 3.99 0.15
nucleotides velvet adaptive 122000 11 68 1.16 3.02 0 0 0.62 3.74 0.62
nucleotides velvet careful 156000 8 44 0.91 0.76 0 0 0.07 2.52 0.07
nucleotides abyss default 209000 7 36 0.42 4.36 3 0 0.24 1.53 0.24
nucleotides abyss adaptive 191000 7 40 0.56 4.63 2 0 0.76 1.63 0.76
nucleotides abyss k-32 148000 10 58 0.79 3.98 5 0 0.25 1.43 0.25
nucleotides abyss k-96 301000 5 29 0.20 4.07 13 0 0.19 1.55 0.19
nucleotides soap-denovo default 24000 47 255 2.80 0.14 0 0 0.12 9.85 0.12
nucleotides soap-denovo kmer-10-cutoff 30000 40 225 2.66 0.35 0 0 0.12 9.85 0.12
koadman docker-a5-miseq default 464000 3 15 0.66 0.90 14 1 2.43 13.11 2.44
egoltsman meraculous2-docker k41 203000 6 37 0.93 0.22 0 0 0.79 3.97 0.80
nucleotides minia default 10000 108 530 2.35 25.29 0 0 0.43 1.65 0.43
nucleotides minia careful 19000 56 313 1.46 0.75 0 0 0.19 1.52 0.19
nucleotides sga default 83000 13 75 1.77 0.32 0 0 1.65 5.12 1.66
nucleotides sga careful 115000 10 57 1.46 0.32 0 0 2.17 5.19 2.18
nucleotides megahit default 32000 36 191 1.05 0.52 1 0 0.42 8.81 0.41
nucleotides megahit no-mercy 45000 26 140 0.99 0.59 1 0 0.37 8.78 0.37
nucleotides sparse-assembler default 133000 11 63 1.11 0.67 0 0 0.09 1.09 0.09
nucleotides sparse-assembler careful 20000 53 290 1.32 0.69 0 0 0.08 1.06 0.07
Read Set 0007

Microbe - approx. size: 3MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 840000 2 12 0.18 3.21 2 0 1.46 5.39 1.50
nucleotides spades single-cell 551000 3 17 0.26 4.56 3 0 1.35 5.22 1.34
nucleotides spades careful 1047000 2 11 0.19 1.67 2 0 2.58 13.24 2.64
nucleotides spades single-cell-careful 701000 2 13 0.20 2.74 3 0 2.48 13.21 2.44
nucleotides idba default 117000 9 53 0.21 0.42 0 0 1.48 3.35 1.63
nucleotides idba single-cell 212000 6 28 0.20 0.47 0 0 0.61 2.86 0.68
nucleotides velvet adaptive 60000 19 97 0.92 9.34 0 0 0.65 3.60 0.72
nucleotides velvet careful 110000 10 43 0.22 0.96 0 0 0.07 2.62 0.07
nucleotides abyss default 425000 3 20 0.03 2.53 4 0 0.23 1.47 0.25
nucleotides abyss adaptive 283000 5 32 0.14 3.65 9 0 0.77 1.50 0.86
nucleotides abyss k-32 102000 8 60 0.75 4.92 13 0 0.27 1.48 0.30
nucleotides abyss k-96 618000 2 16 0.01 1.72 13 0 0.19 1.20 0.21
nucleotides soap-denovo default 12000 81 376 3.48 0.16 0 0 0.12 9.85 0.14
nucleotides soap-denovo kmer-10-cutoff 15000 68 334 3.22 0.12 0 0 0.12 9.85 0.14
koadman docker-a5-miseq default 3219000 1 4 0.16 0.35 3 1 2.43 12.87 2.71
egoltsman meraculous2-docker k41 417000 3 23 0.22 0.30 2 0 0.75 3.87 0.84
nucleotides minia default 6000 153 681 4.08 32.49 0 0 0.44 1.65 0.48
nucleotides minia careful 19000 49 265 0.64 0.67 0 0 0.17 1.66 0.19
nucleotides sga default 80000 12 63 1.15 0.14 0 0 1.69 5.11 1.91
nucleotides sga careful 116000 8 42 0.84 0.18 0 0 2.25 5.23 2.53
nucleotides megahit default 24000 41 213 0.45 1.11 0 1 0.48 8.88 0.52
nucleotides megahit no-mercy 32000 31 163 0.40 0.25 0 0 0.42 8.67 0.47
nucleotides sparse-assembler default 124000 8 52 0.49 0.80 1 0 0.09 1.11 0.10
nucleotides sparse-assembler careful 22000 43 239 0.61 0.50 0 0 0.08 1.08 0.08
Read Set 0008

Microbe - approx. size: 3MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 1303000 2 13 0.20 1.08 1 0 1.58 5.12 1.41
nucleotides spades single-cell 1258000 2 14 0.23 2.27 4 1 1.43 5.36 1.22
nucleotides spades careful 1303000 2 13 0.20 0.81 1 0 2.58 14.20 2.31
nucleotides spades single-cell-careful 1220000 2 14 0.22 1.40 4 0 2.47 14.09 2.10
nucleotides idba default 445000 4 23 0.22 0.50 1 0 0.83 3.12 0.84
nucleotides idba single-cell 734000 2 16 0.20 0.50 1 0 0.57 2.90 0.58
nucleotides idba idba 2000 573 1254 23.59 0.05 0 0 0.32 2.49 0.34
nucleotides velvet-optimiser default 1256000 2 9 0.25 9.39 7 0 2.24 15.44 2.27
nucleotides velvet default 157000 8 45 0.48 4.91 0 0 0.12 3.06 0.13
nucleotides velvet adaptive 969000 3 16 0.27 0.52 0 0 0.54 2.30 0.55
nucleotides velvet careful 1138000 2 12 0.22 0.56 1 0 0.07 2.16 0.07
nucleotides abyss default 1262000 2 9 2.46 3.43 4 0 0.24 1.31 0.25
nucleotides abyss adaptive 1120000 2 10 2.43 0.91 2 0 0.69 1.31 0.72
nucleotides abyss k-32 478000 3 18 2.59 0.70 5 0 0.24 1.23 0.25
nucleotides abyss k-96 1497000 2 5 2.39 0.95 1 1 0.18 1.10 0.19
nucleotides soap-denovo default 102000 11 72 0.60 0.11 0 0 0.10 7.12 0.11
nucleotides soap-denovo kmer-10-cutoff 121000 10 64 1.55 0.10 0 0 0.11 7.12 0.11
koadman docker-a5-miseq default 2796000 1 6 0.16 0.63 3 3 2.75 13.93 2.79
egoltsman meraculous2-docker k41 1238000 2 10 0.21 0.39 1 0 0.72 3.89 0.74
nucleotides minia default 96000 12 69 0.31 6.98 0 0 0.40 1.62 0.40
nucleotides minia careful 425000 3 18 0.22 0.55 1 0 0.18 1.60 0.18
nucleotides sga default 1256000 2 11 0.18 0.48 1 0 1.46 5.16 1.48
nucleotides sga careful 818000 2 12 0.19 0.48 1 0 1.90 5.21 1.93
nucleotides megahit default 139000 9 46 0.24 0.36 0 0 0.28 8.78 0.28
nucleotides megahit no-mercy 151000 8 40 0.24 0.38 0 0 0.28 8.57 0.28
nucleotides sparse-assembler default 482000 3 18 0.29 0.32 2 0 0.09 1.00 0.09
nucleotides sparse-assembler careful 647000 3 16 0.19 0.51 1 0 0.07 0.99 0.08
Read Set 0009

Microbe - approx. size: 3MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 28000 41 212 6.78 3.72 8 1 1.54 5.81 1.44
nucleotides spades single-cell 24000 44 224 7.11 8.20 9 1 1.44 5.64 1.31
nucleotides spades careful 28000 41 212 6.79 2.47 8 1 2.84 8.56 2.67
nucleotides spades single-cell-careful 24000 44 224 7.12 3.19 9 1 2.76 8.44 2.50
nucleotides idba default 18000 63 293 7.42 0.33 0 1 1.63 3.25 1.66
nucleotides idba single-cell 20000 58 271 7.31 0.46 0 1 0.89 2.90 0.92
nucleotides velvet adaptive 14000 82 355 8.69 11.73 0 0 0.66 3.76 0.69
nucleotides velvet careful 21000 56 260 7.45 1.12 0 1 0.07 2.50 0.07
nucleotides abyss default 24000 46 231 5.58 2.57 10 1 0.26 1.81 0.26
nucleotides abyss adaptive 22000 50 248 5.95 3.70 11 1 0.80 1.72 0.80
nucleotides abyss k-32 21000 55 265 6.87 3.47 18 2 0.28 1.45 0.28
nucleotides abyss k-96 26000 45 226 4.60 2.63 9 1 0.21 1.46 0.21
nucleotides soap-denovo default 7000 156 603 11.70 0.35 0 0 0.12 7.12 0.12
nucleotides soap-denovo kmer-10-cutoff 8000 133 525 10.99 0.34 0 0 0.10 7.12 0.11
koadman docker-a5-miseq default 29000 38 193 6.20 2.04 37 9 2.54 13.17 2.60
egoltsman meraculous2-docker k41 24000 45 219 7.89 0.28 3 0 0.81 4.06 0.85
nucleotides minia default 5000 219 798 12.65 43.59 0 0 0.45 1.66 0.46
nucleotides minia careful 10000 110 484 8.32 0.79 0 0 0.18 1.62 0.19
nucleotides sga default 19000 61 281 7.92 0.41 0 0 1.65 5.26 1.59
nucleotides sga careful 20000 57 263 7.63 0.44 0 0 2.16 5.13 2.04
nucleotides megahit default 11000 105 444 8.03 0.40 0 1 0.48 8.59 0.48
nucleotides megahit no-mercy 12000 94 407 7.86 0.38 0 1 0.42 8.57 0.43
nucleotides sparse-assembler default 18000 65 299 8.18 1.20 3 0 0.09 1.09 0.09
nucleotides sparse-assembler careful 11000 101 451 8.01 0.82 1 0 0.08 1.06 0.08
Read Set 0010

Microbe - approx. size: 3MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 55000 20 114 1.99 11.30 8 1 1.49 5.52 1.33
nucleotides spades single-cell 37000 32 171 2.47 16.94 15 3 1.43 5.54 1.24
nucleotides spades careful 55000 20 114 1.99 8.32 9 1 2.72 9.90 2.43
nucleotides spades single-cell-careful 38000 31 166 2.46 9.17 15 3 2.77 9.03 2.40
nucleotides idba default 32000 38 195 2.67 0.22 1 0 1.70 3.26 1.62
nucleotides idba single-cell 36000 35 175 2.58 0.37 1 0 0.90 2.91 0.86
nucleotides velvet-optimiser default 56000 21 118 3.70 52.31 90 29 2.54 15.45 2.46
nucleotides velvet default 8000 207 708 9.35 19.02 0 0 0.15 4.14 0.15
nucleotides velvet adaptive 32000 46 214 2.86 0.90 1 0 0.56 3.60 0.54
nucleotides velvet careful 36000 40 185 2.67 0.66 1 0 0.07 2.60 0.06
nucleotides abyss default 43000 27 146 1.68 6.20 11 0 0.24 1.48 0.23
nucleotides abyss adaptive 56000 21 114 1.45 3.80 11 0 0.71 1.50 0.67
nucleotides abyss k-32 24000 49 235 3.56 6.41 23 0 0.28 1.62 0.27
nucleotides abyss k-96 58000 19 105 1.19 4.59 11 0 0.19 1.21 0.18
nucleotides soap-denovo default 6000 186 747 9.32 0.10 0 0 0.12 9.85 0.12
nucleotides soap-denovo kmer-10-cutoff 6000 181 734 9.10 0.08 0 0 0.12 9.85 0.12
koadman docker-a5-miseq default 99000 12 68 1.67 2.35 42 9 2.47 12.94 2.38
egoltsman meraculous2-docker k41 58000 19 110 2.77 0.50 4 0 0.82 3.99 0.80
nucleotides minia default 7000 164 695 5.74 19.79 0 0 0.45 1.64 0.43
nucleotides minia careful 12000 99 465 3.66 0.95 0 1 0.20 1.50 0.19
nucleotides sga default 40000 32 156 2.96 0.24 0 0 1.70 5.34 1.60
nucleotides sga careful 40000 31 151 2.79 0.31 0 0 2.23 5.33 2.09
nucleotides megahit default 21000 58 280 2.87 0.43 0 0 0.47 8.78 0.44
nucleotides megahit no-mercy 25000 48 233 2.80 0.33 0 0 0.37 8.70 0.36
nucleotides sparse-assembler default 16000 71 333 3.71 0.85 6 0 0.10 1.11 0.09
nucleotides sparse-assembler careful 13000 89 421 3.18 0.83 1 0 0.08 1.08 0.07
Read Set 0011

Microbe - approx. size: 4MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 540000 3 19 0.50 12.91 7 0 1.63 5.63 1.28
nucleotides spades single-cell 471000 4 29 0.53 15.10 10 0 1.48 5.96 1.14
nucleotides spades careful 538000 3 21 0.49 8.72 7 0 3.28 14.47 2.59
nucleotides spades single-cell-careful 569000 3 28 0.53 8.63 9 0 3.18 14.35 2.43
nucleotides idba default 126000 12 66 0.70 0.87 0 0 1.35 3.65 1.12
nucleotides idba single-cell 206000 8 47 0.62 1.02 0 0 0.63 2.95 0.53
nucleotides velvet careful 81000 16 93 0.67 1.74 0 0 0.07 2.77 0.06
nucleotides abyss default 239000 7 36 0.56 2.74 7 0 0.24 1.65 0.20
nucleotides abyss adaptive 15000 236 845 10.01 5.90 22 0 0.86 1.60 0.70
nucleotides abyss k-32 62000 19 125 1.12 7.72 16 0 0.27 1.83 0.23
nucleotides abyss k-96 93000 16 90 0.51 5.06 21 0 0.20 1.35 0.17
nucleotides soap-denovo default 6000 211 866 8.34 0.57 0 0 0.12 9.85 0.10
nucleotides soap-denovo kmer-10-cutoff 7000 190 813 7.84 0.56 0 0 0.12 9.85 0.10
koadman docker-a5-miseq default 968000 2 16 0.42 0.94 14 2 2.36 12.72 1.97
egoltsman meraculous2-docker k41 167000 8 84 1.24 1.04 6 0 0.79 4.22 0.67
nucleotides minia default 12000 118 546 2.34 18.39 0 0 0.45 1.66 0.37
nucleotides minia careful 3000 306 1162 13.12 1.57 0 0 0.18 1.72 0.15
nucleotides sga default 44000 31 157 3.42 1.00 0 0 1.68 5.28 1.44
nucleotides sga careful 63000 22 113 2.21 1.00 0 0 2.31 5.17 1.96
nucleotides megahit default 20000 66 327 1.07 1.16 0 1 0.53 9.06 0.43
nucleotides megahit no-mercy 31000 44 225 0.90 0.88 0 0 0.43 9.03 0.36
nucleotides sparse-assembler default 57000 25 139 1.12 1.85 5 0 0.10 1.15 0.08
nucleotides sparse-assembler careful 4000 248 1059 9.66 1.69 1 0 0.07 1.11 0.06
Read Set 0013

Microbe - approx. size: 4MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 392000 5 30 1.03 2.53 1 0 1.52 5.63 1.12
nucleotides spades single-cell 380000 5 33 1.09 4.32 3 0 1.39 5.52 0.99
nucleotides spades careful 392000 5 29 1.03 1.55 1 0 2.71 14.76 1.99
nucleotides spades single-cell-careful 392000 5 31 1.12 1.51 4 0 2.59 14.72 1.83
nucleotides idba default 161000 10 63 1.16 0.42 0 0 1.23 3.30 0.96
nucleotides idba single-cell 215000 8 48 1.14 0.51 0 0 0.63 3.00 0.49
nucleotides velvet-optimiser default 297000 6 41 1.26 17.41 20 0 2.45 15.47 1.93
nucleotides velvet default 33000 45 257 2.47 13.53 0 0 0.14 3.88 0.11
nucleotides velvet adaptive 162000 15 87 1.43 3.15 0 0 0.55 3.64 0.44
nucleotides velvet careful 204000 9 52 1.19 0.61 0 0 0.07 2.46 0.05
nucleotides abyss default 303000 7 39 0.97 7.32 2 0 0.24 1.58 0.19
nucleotides abyss adaptive 294000 7 43 0.85 5.99 4 0 0.70 1.44 0.55
nucleotides abyss k-32 122000 12 77 0.61 8.82 4 0 0.27 1.43 0.21
nucleotides abyss k-96 321000 6 30 0.90 4.61 7 0 0.22 1.41 0.17
nucleotides soap-denovo default 20000 70 398 3.57 0.40 0 0 0.11 7.12 0.09
nucleotides soap-denovo kmer-10-cutoff 20000 68 391 3.47 0.41 0 0 0.11 7.12 0.09
koadman docker-a5-miseq default 435000 4 22 0.96 0.49 14 2 2.45 13.21 1.93
egoltsman meraculous2-docker k41 323000 6 42 1.28 0.44 3 0 0.80 4.30 0.64
nucleotides minia default 23000 61 346 1.99 14.49 0 0 0.44 1.67 0.35
nucleotides minia careful 13000 100 567 2.40 0.75 0 0 0.20 1.62 0.16
nucleotides sga default 174000 10 62 1.37 0.36 0 0 1.63 5.27 1.28
nucleotides sga careful 186000 9 53 1.29 0.38 0 0 2.16 5.35 1.69
nucleotides megahit default 58000 25 149 1.30 2.00 0 0 0.42 8.61 0.33
nucleotides megahit no-mercy 71000 19 119 1.27 1.89 0 0 0.37 8.53 0.29
nucleotides sparse-assembler default 136000 12 76 1.52 0.90 2 0 0.09 1.09 0.07
nucleotides sparse-assembler careful 16000 81 452 1.89 0.68 0 0 0.08 1.06 0.06
Read Set 0014

Microbe - approx. size: 3MBp, approx. GC: 70%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 721000 2 19 0.31 3.25 8 1 1.39 5.51 1.45
nucleotides spades single-cell 366000 4 22 0.40 9.44 14 0 1.29 5.48 1.30
nucleotides spades careful 721000 2 18 0.33 1.58 9 1 2.52 13.07 2.63
nucleotides spades single-cell-careful 367000 4 21 0.37 3.45 15 0 2.51 13.05 2.51
nucleotides idba default 65000 17 84 0.64 0.56 2 0 1.60 3.39 1.81
nucleotides idba single-cell 105000 9 48 0.60 0.81 2 0 0.69 2.84 0.78
nucleotides velvet adaptive 61000 18 105 1.30 5.28 2 0 0.63 4.26 0.71
nucleotides velvet careful 73000 12 69 0.76 0.98 3 0 0.07 2.63 0.08
nucleotides abyss default 168000 7 37 0.19 4.90 7 0 0.24 1.43 0.27
nucleotides abyss adaptive 156000 6 46 0.29 5.31 11 0 0.75 1.65 0.85
nucleotides abyss k-32 93000 12 82 1.19 3.89 15 0 0.26 1.50 0.30
nucleotides abyss k-96 133000 8 42 0.14 5.72 22 0 0.19 1.16 0.22
nucleotides soap-denovo default 12000 77 383 4.68 0.28 0 0 0.12 9.85 0.14
nucleotides soap-denovo kmer-10-cutoff 15000 60 321 4.37 0.29 1 0 0.12 9.85 0.14
koadman docker-a5-miseq default 861000 2 15 0.37 1.05 11 5 2.36 12.81 2.69
egoltsman meraculous2-docker k41 125000 9 44 0.52 0.30 7 0 0.78 3.85 0.89
nucleotides minia default 5000 192 755 6.12 39.00 1 0 0.44 1.65 0.49
nucleotides minia careful 13000 75 357 1.64 0.88 1 0 0.19 1.43 0.22
nucleotides sga default 46000 24 124 2.33 0.22 2 0 1.72 5.23 1.99
nucleotides sga careful 63000 17 89 1.77 0.22 1 0 2.27 5.39 2.60
nucleotides megahit default 17000 61 290 1.04 1.28 1 2 0.49 8.71 0.55
nucleotides megahit no-mercy 24000 43 208 0.88 0.39 1 0 0.42 8.92 0.48
nucleotides sparse-assembler default 70000 16 98 1.10 1.29 6 0 0.09 1.11 0.10
nucleotides sparse-assembler careful 13000 69 338 1.41 0.66 2 0 0.08 1.08 0.08
Read Set 0015

Microbe - approx. size: 4MBp, approx. GC: 50%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 209000 8 54 0.62 3.44 0 2 1.62 5.77 1.15
nucleotides spades single-cell 190000 8 72 1.34 6.89 1 1 1.48 5.80 1.02
nucleotides spades careful 209000 8 56 0.65 1.98 0 2 2.90 14.26 2.05
nucleotides spades single-cell-careful 227000 8 66 0.98 2.13 1 2 2.81 14.49 1.92
nucleotides idba default 163000 11 92 1.31 0.04 0 0 0.94 3.23 0.72
nucleotides idba single-cell 174000 9 85 1.29 0.04 0 0 0.63 3.00 0.49
nucleotides idba idba 2000 619 1421 24.66 0.02 0 0 0.31 2.66 0.26
nucleotides velvet-optimiser default 189000 8 85 1.43 12.11 29 8 2.31 15.41 1.80
nucleotides velvet default 57000 27 178 2.75 5.17 0 0 0.13 3.25 0.10
nucleotides velvet adaptive 155000 12 91 1.78 0.66 0 0 0.56 2.57 0.43
nucleotides velvet careful 187000 8 77 1.31 0.13 0 0 0.07 2.18 0.05
nucleotides abyss default 190000 8 77 0.57 12.53 1 1 0.23 1.44 0.18
nucleotides abyss adaptive 187000 8 77 0.67 8.32 0 1 0.71 1.44 0.54
nucleotides abyss k-32 116000 13 114 1.58 10.45 0 1 0.27 1.35 0.21
nucleotides abyss k-96 196000 8 66 0.28 11.01 1 1 0.22 1.22 0.17
nucleotides soap-denovo default 33000 41 253 3.14 0.28 0 0 0.11 7.12 0.09
nucleotides soap-denovo kmer-10-cutoff 33000 40 248 3.12 0.40 0 0 0.11 7.12 0.08
koadman docker-a5-miseq default 247000 6 34 0.51 1.32 43 5 2.74 13.77 2.11
egoltsman meraculous2-docker k41 191000 8 66 1.15 0.15 1 0 0.81 4.15 0.64
nucleotides minia default 59000 25 175 1.94 6.82 0 0 0.42 1.66 0.33
nucleotides minia careful 49000 30 190 1.29 0.26 0 0 0.20 1.59 0.16
nucleotides sga default 192000 9 79 0.92 0.28 0 0 1.51 5.28 1.16
nucleotides sga careful 194000 8 79 0.92 0.27 0 0 1.96 5.38 1.50
nucleotides megahit default 111000 14 109 1.52 2.31 0 0 0.32 8.69 0.25
nucleotides megahit no-mercy 117000 13 103 1.52 2.73 0 0 0.33 8.67 0.25
nucleotides sparse-assembler default 124000 12 102 1.92 0.60 0 0 0.09 1.03 0.07
nucleotides sparse-assembler careful 68000 22 146 1.22 0.14 0 0 0.08 1.01 0.06
Read Set 0016

Microbe - approx. size: 5MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 1121000 2 20 0.29 3.36 5 1 1.56 5.71 1.09
nucleotides spades single-cell 615000 4 32 0.37 4.20 5 1 1.45 6.10 0.98
nucleotides spades careful 1121000 2 20 0.29 2.66 5 1 2.69 14.92 1.88
nucleotides spades single-cell-careful 657000 4 24 0.31 3.03 6 1 2.62 14.91 1.77
nucleotides idba default 209000 8 50 9.13 1.12 2 0 1.09 3.29 0.82
nucleotides idba single-cell 364000 5 38 9.12 1.13 2 0 0.63 3.01 0.48
nucleotides velvet-optimiser default 432000 4 38 9.18 16.80 36 0 2.39 15.47 1.80
nucleotides velvet default 29000 50 267 10.17 11.13 0 0 0.13 3.74 0.10
nucleotides velvet adaptive 63000 32 182 9.88 8.03 0 0 0.65 3.57 0.49
nucleotides velvet careful 410000 5 36 9.19 1.12 1 0 0.07 2.40 0.05
nucleotides abyss default 996000 3 29 0.02 6.21 4 1 0.24 1.90 0.18
nucleotides abyss adaptive 259000 9 60 8.18 7.11 8 0 0.76 1.59 0.57
nucleotides abyss k-32 181000 10 71 9.06 7.62 8 0 0.26 1.45 0.20
nucleotides abyss k-96 1032000 3 23 8.82 4.19 9 1 0.22 1.31 0.16
nucleotides soap-denovo default 17000 90 409 10.91 0.66 0 0 0.11 7.12 0.08
nucleotides soap-denovo kmer-10-cutoff 18000 84 395 10.87 0.73 0 0 0.11 7.12 0.08
koadman docker-a5-miseq default 2320000 2 8 0.15 2.65 19 2 2.51 13.35 1.90
egoltsman meraculous2-docker k41 677000 3 33 9.19 1.76 3 0 0.82 4.21 0.62
nucleotides minia default 32000 45 243 9.56 10.17 0 0 0.44 1.63 0.33
nucleotides minia careful 15000 95 480 9.85 1.20 1 0 0.21 1.49 0.16
nucleotides sga default 291000 6 43 9.13 1.30 2 0 1.59 5.30 1.20
nucleotides sga careful 357000 5 38 9.09 1.32 2 0 2.09 5.19 1.58
nucleotides megahit default 63000 24 123 9.23 1.50 2 0 0.37 8.64 0.28
nucleotides megahit no-mercy 94000 17 97 9.21 1.59 2 0 0.37 8.68 0.28
nucleotides sparse-assembler default 191000 10 60 9.39 1.71 4 0 0.09 1.07 0.07
nucleotides sparse-assembler careful 21000 71 355 9.46 1.12 1 0 0.08 1.05 0.06
Read Set 0017

Microbe - approx. size: 4MBp, approx. GC: 60%

Maintainer Assembler Image Command Bundle NG50 LG50 \#contigs Percent
Unassembled (UN) 		Incorrect
Bases
Per 100kb (IB) 		Local
Misassemblies 		Misassemblies CPU Hrs Peak Memory
Usage (Gb) 		CPU secs per
assembled KBp
nucleotides spades default 64000 22 154 4.81 5.76 7 1 1.48 5.48 1.18
nucleotides spades single-cell 66000 22 146 5.39 10.98 10 3 1.35 5.33 1.05
nucleotides spades careful 63000 22 155 4.83 4.11 7 1 2.76 10.49 2.20
nucleotides spades single-cell-careful 67000 21 146 5.16 5.60 9 2 2.65 10.51 2.06
nucleotides idba default 39000 33 189 6.06 0.70 0 0 1.43 3.25 1.22
nucleotides idba single-cell 43000 31 178 5.99 0.76 0 0 0.83 2.94 0.71
nucleotides velvet-optimiser default 56000 24 149 6.86 18.51 31 2 2.42 15.48 2.10
nucleotides velvet default 17000 79 361 8.21 13.37 0 0 0.14 3.87 0.12
nucleotides velvet adaptive 35000 36 199 6.48 1.90 0 0 0.58 3.53 0.50
nucleotides velvet careful 37000 36 201 6.13 1.05 0 0 0.07 2.46 0.06
nucleotides abyss default 51000 26 165 3.91 5.95 3 0 0.24 1.54 0.20
nucleotides abyss adaptive 49000 29 178 3.79 6.91 13 0 0.72 1.34 0.60
nucleotides abyss k-32 43000 31 169 5.43 7.79 12 0 0.27 1.35 0.23
nucleotides abyss k-96 48000 31 196 3.20 5.80 19 0 0.21 1.44 0.17
nucleotides soap-denovo default 13000 94 441 8.89 0.29 0 0 0.11 7.12 0.10
nucleotides soap-denovo kmer-10-cutoff 14000 90 427 8.85 0.34 0 0 0.11 7.12 0.10
koadman docker-a5-miseq default 78000 16 115 4.39 3.51 52 23 2.55 13.20 2.18
egoltsman meraculous2-docker k41 57000 25 146 6.44 0.64 5 0 0.85 4.04 0.75
nucleotides minia default 17000 81 379 7.21 12.36 0 0 0.44 1.64 0.38
nucleotides minia careful 6000 202 830 10.69 1.06 0 0 0.20 1.61 0.17
nucleotides sga default 34000 37 218 6.60 0.87 2 0 1.62 5.37 1.34
nucleotides sga careful 42000 32 197 6.07 0.83 2 0 2.14 5.43 1.75
nucleotides megahit default 25000 52 265 6.14 1.03 0 1 0.38 8.72 0.32
nucleotides megahit no-mercy 34000 40 212 6.08 1.16 0 0 0.37 8.78 0.32
nucleotides sparse-assembler default 41000 33 185 6.54 1.23 2 1 0.09 1.08 0.08
nucleotides sparse-assembler careful 7000 174 746 9.42 1.14 1 0 0.08 1.06 0.06

Developed by Michael Barton at the Joint Genome Institute